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Research ArticleAdult Brain
Open Access

MRI Features May Predict Molecular Features of Glioblastoma in Isocitrate Dehydrogenase Wild-Type Lower-Grade Gliomas

C.J. Park, K. Han, H. Kim, S.S. Ahn, D. Choi, Y.W. Park, J.H. Chang, S.H. Kim, S. Cha and S.-K. Lee
American Journal of Neuroradiology March 2021, 42 (3) 448-456; DOI: https://doi.org/10.3174/ajnr.A6983
C.J. Park
aFrom the Department of Radiology (C.J.P.), Yonsei University College of Medicine, Seoul, Korea
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K. Han
bDepartment of Radiology (K.H., H.K., S.S.A., Y.W.P., S.-K.L.), Research Institute of Radiological Sciences, Center for Clinical Imaging Data Science
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H. Kim
bDepartment of Radiology (K.H., H.K., S.S.A., Y.W.P., S.-K.L.), Research Institute of Radiological Sciences, Center for Clinical Imaging Data Science
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S.S. Ahn
bDepartment of Radiology (K.H., H.K., S.S.A., Y.W.P., S.-K.L.), Research Institute of Radiological Sciences, Center for Clinical Imaging Data Science
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D. Choi
eDepartment of Computer Science (D.C.), Yonsei University, Seoul, Korea
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Y.W. Park
bDepartment of Radiology (K.H., H.K., S.S.A., Y.W.P., S.-K.L.), Research Institute of Radiological Sciences, Center for Clinical Imaging Data Science
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J.H. Chang
cDepartment of Neurosurgery (J.H.C.)
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S.H. Kim
dDepartment of Pathology (S.H.K.), Yonsei University College of Medicine, Seoul, Korea
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S. Cha
fDepartment of Radiology and Biomedical Imaging (S.C.), University of California San Francisco, San Francisco, California
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S.-K. Lee
bDepartment of Radiology (K.H., H.K., S.S.A., Y.W.P., S.-K.L.), Research Institute of Radiological Sciences, Center for Clinical Imaging Data Science
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  • FIG 1.
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    FIG 1.

    Flow chart showing the distribution of the patient population in the training (A) and the test (B) sets. IDHwt indicates isocitrate dehydrogenase wild-type.

  • FIG 2.
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    FIG 2.

    Representative cases of IDH wild-type lower-grade gliomas with (A) and without (B) molecular features of GBM. A, Initial MR imaging of a 49-year-old man with IDH wild-type lower-grade glioma with molecular features of GBM, WHO grade III. MRIs reveal infiltrative T2-hyperintense tumor in the right frontal and parietal lobes extending into the corpus callosum with cortical involvement (left). Focal contrast enhancement is noted in the right frontal lobe (right). B, Initial MRIs of a 26-year-old woman without molecular features of GBM, WHO grade III. MRIs reveal a relatively well-defined enhancing mass with peritumoral edema in the right temporo-occipital lobe without cortical involvement.

  • FIG 3.
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    FIG 3.

    Heat maps illustrating the predictive performance (AUCs) of the different combinations of feature selection methods (rows) and classifiers (columns) from models 3 and 4 in the test set. LDA indicates linear discriminant analysis; AdaBoost, adaptive boosting.

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    FIG 4.

    Receiver operating characteristic curves of models 1, 2, 3, and 4 with the highest predictive performance. The combination of SVM and RFE shows the highest predictive performance in both models 3 and 4.

Tables

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    Table 1:

    Patient clinical characteristicsa

    Clinical CharacteristicsTraining SetTest Set, Institution 2P Valueb
    Institution 1TCGA
    No. of patients323257
    Age (yr)49.0 [SD, 19.1]51.1 [SD, 14.7]53.4 [SD, 16.2].291
    Sex (male/female)19:1317:1527:30.901
    WHO grade.800
     Grade II16 (50.0%)9 (28.1%)23 (40.4%)
     Grade III16 (50.0%)23 (71.9%)34 (59.6%)
    Molecular GBM status.053
     With molecular features of GBM21 (65.6%)26 (81.3%)32 (56.1%)
     Without molecular features of GBM11 (34.4%)6 (18.7%)25 (43.9%)
    • ↵a Data are expressed as a mean [SD] or as a number with percentage in parentheses.

    • ↵b Comparisons between the training and the test sets using the Student t test for continuous variables and the χ2 test for categoric variables.

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    Table 2:

    Highest predictive performances of different models in identifying the molecular features of glioblastomas in IDH wild-type lower-grade gliomas in the test set

    ModelFeature Selection + ClassifierAUCP Values for Model Comparisons
    Model 1 (clinical features)NA0.514 (0.356–0.672)
    Model 2 (VASARI features)NA0.648 (0.511–0.784)
    Model 3 (VASARI + radiomics features)RFE + SVM0.854 (0.766–0.941)<.001a.023b
    Model 4 (clinical + VASARI + radiomics features)RFE + SVM0.863 (0.778–0.947)<.001a.02b.476c
    • Note:—NA indicates not applicable.

    • ↵a Compared with model 1.

    • ↵b Compared with model 2.

    • ↵c Compared with model 3.

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American Journal of Neuroradiology: 42 (3)
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Cite this article
C.J. Park, K. Han, H. Kim, S.S. Ahn, D. Choi, Y.W. Park, J.H. Chang, S.H. Kim, S. Cha, S.-K. Lee
MRI Features May Predict Molecular Features of Glioblastoma in Isocitrate Dehydrogenase Wild-Type Lower-Grade Gliomas
American Journal of Neuroradiology Mar 2021, 42 (3) 448-456; DOI: 10.3174/ajnr.A6983

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MRI Features May Predict Molecular Features of Glioblastoma in Isocitrate Dehydrogenase Wild-Type Lower-Grade Gliomas
C.J. Park, K. Han, H. Kim, S.S. Ahn, D. Choi, Y.W. Park, J.H. Chang, S.H. Kim, S. Cha, S.-K. Lee
American Journal of Neuroradiology Mar 2021, 42 (3) 448-456; DOI: 10.3174/ajnr.A6983
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