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AJNR Awards, New Junior Editors, and more. Read the latest AJNR updates

Research ArticleAdult Brain

Neuroimaging-Based Classification Algorithm for Predicting 1p/19q-Codeletion Status in IDH-Mutant Lower Grade Gliomas

P.P. Batchala, T.J.E. Muttikkal, J.H. Donahue, J.T. Patrie, D. Schiff, C.E. Fadul, E.K. Mrachek, M.-B. Lopes, R. Jain and S.H. Patel
American Journal of Neuroradiology March 2019, 40 (3) 426-432; DOI: https://doi.org/10.3174/ajnr.A5957
P.P. Batchala
aFrom the Department of Radiology and Medical Imaging (P.P.B., T.J.E.M., J.H.D., S.H.P.)
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  • ORCID record for P.P. Batchala
T.J.E. Muttikkal
aFrom the Department of Radiology and Medical Imaging (P.P.B., T.J.E.M., J.H.D., S.H.P.)
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J.H. Donahue
aFrom the Department of Radiology and Medical Imaging (P.P.B., T.J.E.M., J.H.D., S.H.P.)
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J.T. Patrie
bDepartment of Public Health Sciences (J.T.P.)
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D. Schiff
cDivision of Neuro-Oncology (D.S., C.E.F.)
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C.E. Fadul
cDivision of Neuro-Oncology (D.S., C.E.F.)
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E.K. Mrachek
dDepartment of Pathology (E.K.M., M.-B.L.), Divisions of Neuropathology and Molecular Diagnostics, University of Virginia Health System, Charlottesville, Virginia
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M.-B. Lopes
dDepartment of Pathology (E.K.M., M.-B.L.), Divisions of Neuropathology and Molecular Diagnostics, University of Virginia Health System, Charlottesville, Virginia
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R. Jain
eDepartments of Radiology (R.J.)
fNeurosurgery (R.J.), New York University School of Medicine, New York, New York.
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S.H. Patel
aFrom the Department of Radiology and Medical Imaging (P.P.B., T.J.E.M., J.H.D., S.H.P.)
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    Fig 1.

    A 38-year-old man with a left frontal lobe diffuse astrocytoma, IDH-mutant and 1p/19q-noncodeleted, showing characteristic imaging features. A, On T2WI, the mass is homogeneously hyperintense, sharply marginated, and without significant cortical infiltration. B, FLAIR sequence shows central suppression of signal compared with the T2WI, except for a peripheral rim (ie, T2-FLAIR mismatch sign). C, T2*WI shows lack of susceptibility blooming.

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    Fig 2.

    A 54-year-old woman with a left frontal lobe oligodendroglioma, IDH-mutant and 1p/19q-codeleted, showing characteristic imaging features. A and B, T2WI and FLAIR demonstrate a heterogeneous and poorly marginated mass with significant cortical infiltration and no T2-FLAIR mismatch sign. C, T2*WI shows regions of striking susceptibility blooming.

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    Fig 3.

    Classification algorithm for 1p/19q-codeletion status in IDH-mutant LGGs, derived from an analysis of the TCGA/TCIA training cohort. The first step of the algorithm is an assessment of the T2-FLAIR mismatch sign; when present, it indicates, with high certainty, the IDH-mutant 1p/19q-noncodeleted subtype. When the T2-FLAIR mismatch sign is absent (or unavailable), a multivariate logistic regression model based on tumor texture, patient age, T2* blooming, tumor location, and hydrocephalus is applied. The equation for the logistic regression model is the following: ρ codeleted = exp[(Xβ) / (1+exp(Xβ)′], where Xβ = −4.8834 + 2.7842 × (texture <75% homogeneous) + 0.0587 × (patient age) + 3.1948 × (T2* susceptibility blooming present) + 1.6646 × (primary lobe = frontal) − 3.4496 × (hydrocephalus = present). A predicted probability threshold of 0.40 was established for the logistic regression model, based on the Youden J statistic. Cases were classified as either 1p/19q codeleted or non-codeleted based on whether their predicted probability was ≥ or < 0.40, respectively.

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    Table 1:

    Univariate logistic regression analyses for predicting 1p/19q codeletion among the training dataset

    PredictorRatioOdds Ratio (95% CI)P Value
    Maximum diameter (cm)1st Quartile: 3rd quartile1.33 (0.70–2.49).381
    MarginsIrregular: sharp1.04 (0.47–2.33).917
    TextureHomogeneous (<75%): homogeneous (>75%)12.33 (4.66–31.58)<.001a
    Peritumoral edemaYes: no1.42 (0.62–3.23).973
    HydrocephalusNo: yes2.32 (0.88–6.11).089
    Midline shift (cm)b1st Quartile: 3rd quartile4.27 (1.49–12.23).027a
    EnhancementYes: no1.28 (0.57–2.86).555
    NecrosisYes: no2.18 (0.61–7.69).228
    T2* bloomingYes: no6.92 (2.04–23.49).002a
    Cortical infiltrationYes: no2.02 (0.67–6.10).212
    CystNo: yes1.18 (0.48–2.91).715
    T2 FLAIR mismatch signcNo: yes22.50 (6.26–∞)<.001a
    GliomatosisYes: no1.13 (0.18–7.08).896
    Primary lobeFrontal: nonfrontal5.68 (2.08–15.44).001a
    Age3rd Quartile: 1st quartile3.38 (1.71–6.71)<.001a
    SexFemale: male1.55 (0.69–3.50).283
    • ↵a Significant.

    • ↵b Analyzed as a restricted cubic spline function of the predictor.

    • ↵c Median unbiased estimate derived with exact logistic regression.

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    Table 2:

    Training dataset classification summary for predicting 1p/19q codeletion based on the classification algorithm in Fig 3a

    Classification Algorithm PredictionMolecular Status
    1p/19q Codeleted1p/19q Noncodeleted
    1p/19q Codeleted3410
    1p/19q Noncodeleted454
    • ↵a Overall prediction accuracy was 86.3%.

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    Table 3:

    Validation dataset classification summary for predicting 1p/19q codeletion with 2 independent readers based on the classification algorithm in Fig 3a

    Reader A PredictionMolecular StatusReader B PredictionMolecular Status
    1p/19q Codeleted1p/19q Noncodeleted1p/19q Codeleted1p/19q Noncodeleted
    1p/19q Codeleted48121p/19q Codeleted4815
    1p/19q Noncodeleted8381p/19q Noncodeleted736
    • ↵a Overall prediction accuracy was 81.1% for reader A and 79.2% for reader B.

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American Journal of Neuroradiology: 40 (3)
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P.P. Batchala, T.J.E. Muttikkal, J.H. Donahue, J.T. Patrie, D. Schiff, C.E. Fadul, E.K. Mrachek, M.-B. Lopes, R. Jain, S.H. Patel
Neuroimaging-Based Classification Algorithm for Predicting 1p/19q-Codeletion Status in IDH-Mutant Lower Grade Gliomas
American Journal of Neuroradiology Mar 2019, 40 (3) 426-432; DOI: 10.3174/ajnr.A5957

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Neuroimaging-Based Classification Algorithm for Predicting 1p/19q-Codeletion Status in IDH-Mutant Lower Grade Gliomas
P.P. Batchala, T.J.E. Muttikkal, J.H. Donahue, J.T. Patrie, D. Schiff, C.E. Fadul, E.K. Mrachek, M.-B. Lopes, R. Jain, S.H. Patel
American Journal of Neuroradiology Mar 2019, 40 (3) 426-432; DOI: 10.3174/ajnr.A5957
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